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1.
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Addition of α-1,3-glucan-binding domains to α-1,3-glucanase Agn1p from Schizosaccharomyces pombe enhances hydrolytic activity of insoluble α-1,3-glucan.
J Gen Appl Microbiol. 2024 Feb 13. doi: 10.2323/jgam.2024.02.001. Online ahead of print.
PMID: 38346750 |
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2.
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β-Strand-mediated Domain-swapping in the Absence of Hydrophobic Core Repacking.
J Mol Biol. 2024 Jan 15;436(2):168405. doi: 10.1016/j.jmb.2023.168405. Epub 2023 Dec 15.
PMID: 38104859 |
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3.
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α-1,3-Glucanase from the gram-negative bacterium Flavobacterium sp. EK-14 hydrolyzes fungal cell wall α-1,3-glucan.
Sci Rep. 2023 Dec 5;13(1):21420. doi: 10.1038/s41598-023-48627-y.
PMID: 38049513 Free PMC article. |
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4.
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Aspergillus oryzae α-l-rhamnosidase: Crystal structure and insight into the substrate specificity.
Proteins. 2024 Feb;92(2):236-245. doi: 10.1002/prot.26608. Epub 2023 Oct 11.
PMID: 37818702 |
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5.
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Construction of IgG-Fab2 bispecific antibody via intein-mediated protein trans-splicing reaction.
Sci Rep. 2023 Sep 25;13(1):15961. doi: 10.1038/s41598-023-43110-0.
PMID: 37749185 Free PMC article. |
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6.
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Incorporation of a repeated polypeptide sequence in therapeutic antibodies as a universal masking procedure: A case study of T cell-engaging bispecific antibodies.
N Biotechnol. 2023 Nov 25;77:80-89. doi: 10.1016/j.nbt.2023.07.004. Epub 2023 Jul 17.
PMID: 37467927 |
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7.
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Heterologous expression of α-1,3-glucanase Agn1p from Schizosaccharomyces pombe, and efficient production of nigero-oligosaccharides by enzymatic hydrolysis from solubilized α-1,3;1,6-glucan.
Biosci Biotechnol Biochem. 2023 Sep 21;87(10):1219-1228. doi: 10.1093/bbb/zbad094.
PMID: 37410615 |
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8.
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Cloning and structural basis of fluorescent protein color variants from identical species of sea anemone, Diadumene lineata.
Photochem Photobiol Sci. 2023 Jul;22(7):1591-1601. doi: 10.1007/s43630-023-00399-0. Epub 2023 Mar 21.
PMID: 36943649 |
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9.
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GH-16 Type β-1,3-Glucanase from Lysobacter sp. MK9-1 Enhances Antifungal Activity of GH-19 Type Chitinase, and Its Glucan-binding Domain Binds to Fungal Cell-wall.
J Appl Glycosci (1999). 2022 Aug 22;69(3):49-56. doi: 10.5458/jag.jag.JAG-2022_0002. eCollection 2022.
PMID: 36304837 Free PMC article. |
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10.
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Mutational analysis of the effects of N-glycosylation sites on the activity and thermal stability of rutinosidase from Aspergillus oryzae.
Enzyme Microb Technol. 2022 Nov;161:110112. doi: 10.1016/j.enzmictec.2022.
PMID: 35988320 |
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11.
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Surface Engineering of Top7 to Facilitate Structure Determination.
Int J Mol Sci. 2022 Jan 9;23(2):701. doi: 10.3390/ijms23020701.
PMID: 35054886 Free PMC article. |
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12.
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Anti-EGFR antibody 528 binds to domain III of EGFR at a site shifted from the cetuximab epitope.
Sci Rep. 2021 Mar 11;11(1):5790. doi: 10.1038/s41598-021-84171-3.
PMID: 33707468 Free PMC article. |
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13.
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The total synthesis of berberine and selected analogues, and their evaluation as amyloid beta aggregation inhibitors.
Eur J Med Chem. 2021 Apr 5;215:113289. doi: 10.1016/j.ejmech.2021.113289. Epub 2021 Feb 13.
PMID: 33611188 |
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14.
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Structural analysis of the β-sheet edge of peptide self-assembly using a model protein.
Proteins. 2021 Jul;89(7):845-852. doi: 10.1002/prot.26063. Epub 2021 Feb 22.
PMID: 33576533 |
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15.
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Cloning, expression, and characterization of a GH 19-type chitinase with antifungal activity from Lysobacter sp. MK9-1.
J Biosci Bioeng. 2021 Apr;131(4):348-355. doi: 10.1016/j.jbiosc.2020.11.005. Epub 2020 Dec 3.
PMID: 33281068 |
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16.
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Aspergillus oryzae Rutinosidase: Biochemical and Structural Investigation.
Appl Environ Microbiol. 2021 Jan 15;87(3):e02438-20. doi: 10.1128/AEM.02438-20. Print 2021 Jan 15.
PMID: 33218993 Free PMC article. |
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17.
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Design, synthesis and evaluation of diaryl γ-dihydropyrone derivatives as cyclocurcumin mimetics and inhibitors of the aggregation of amyloid β.
Bioorg Chem. 2020 Nov;104:104302. doi: 10.1016/j.bioorg.2020.104302. Epub 2020 Sep 22.
PMID: 33007741 |
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18.
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Residue-Specific Binding Mechanisms of Thioflavin T to a Surface of Flat β-Sheets within a Peptide Self-Assembly Mimic.
Biochemistry. 2020 Aug 4;59(30):2782-2787. doi: 10.1021/acs.biochem.0c00280. Epub 2020 Jun 10.
PMID: 32496046 |
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19.
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Cooperative unfolding of a single-layer β-sheet protein, CPAP G-box.
Biochem Biophys Res Commun. 2020 May 21;526(1):105-109. doi: 10.1016/j.bbrc.2020.03.056. Epub 2020 Mar 17.
PMID: 32197835 |
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20.
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Molecular basis of flexible peptide recognition by an antibody.
J Biochem. 2020 Apr 1;167(4):343-345. doi: 10.1093/jb/mvaa017.
PMID: 32027351 |
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21.
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Construction of a circularly connected VHH bispecific antibody (cyclobody) for the desirable positioning of antigen-binding sites.
Biochem Biophys Res Commun. 2020 Feb 26;523(1):72-77. doi: 10.1016/j.bbrc.2019.12.018. Epub 2019 Dec 9.
PMID: 31831177 |
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22.
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Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 α-1,3-glucanase from Paenibacillus glycanilyticus FH11.
FEBS J. 2020 Jun;287(12):2524-2543. doi: 10.1111/febs.15161. Epub 2019 Dec 19.
PMID: 31788942 |
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23.
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Crystal structure of the catalytic unit of GH 87-type α-1,3-glucanase Agl-KA from Bacillus circulans.
Sci Rep. 2019 Oct 25;9(1):15295. doi: 10.1038/s41598-019-51822-5.
PMID: 31653959 Free PMC article. |
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24.
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Condensed desmin and actin cytoskeletal communication in lipid droplets.
Cytoskeleton (Hoboken). 2019 Sep;76(9-10):477-490. doi: 10.1002/cm.21573. Epub 2019 Nov 8.
PMID: 31626391 |
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25.
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Design, synthesis, and evaluation of a water soluble C5-monoketone type curcumin analogue as a potent amyloid β aggregation inhibitor.
Bioorg Med Chem Lett. 2019 Aug 15;29(16):2157-2161. doi: 10.1016/j.bmcl.2019.06.052. Epub 2019 Jun 27.
PMID: 31262559 |
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26.
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Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem. 2019 Oct 1;20(19):2454-2457. doi: 10.1002/cbic.201900179. Epub 2019 Sep 17.
PMID: 31094059 |
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27.
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Grafting a short chameleon sequence from αB crystallin into a β-sheet scaffold protein.
Proteins. 2019 May;87(5):416-424. doi: 10.1002/prot.25663. Epub 2019 Feb 3.
PMID: 30684364 |
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28.
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X-ray crystallographic analysis of the catalytic domain of α-1,3-glucanase FH1 from Paenibacillus glycanilyticus overexpressed in Brevibacillus choshinensis.
Acta Crystallogr F Struct Biol Commun. 2018 Dec 1;74(Pt 12):770-773. doi: 10.1107/S2053230X18013109. Epub 2018 Nov 16.
PMID: 30511670 Free PMC article. |
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29.
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Design, synthesis and evaluation of curcumin-based fluorescent probes to detect Aβ fibrils.
Bioorg Med Chem Lett. 2018 Dec 1;28(22):3520-3525. doi: 10.1016/j.bmcl.2018.10.002. Epub 2018 Oct 3.
PMID: 30297285 |
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30.
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An Overlapping Region between the Two Terminal Folding Units of the Outer Surface Protein A (OspA) Controls Its Folding Behavior.
J Mol Biol. 2018 Jun 8;430(12):1799-1813. doi: 10.1016/j.jmb.2018.04.025. Epub 2018 Apr 27.
PMID: 29709572 |
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31.
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Structural considerations for functional anti-EGFR × anti-CD3 bispecific diabodies in light of domain order and binding affinity.
Oncotarget. 2018 Feb 14;9(17):13884-13893. doi: 10.18632/oncotarget.24490. eCollection 2018 Mar 2.
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32.
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Impact in stability during sequential CDR grafting to construct camelid VHH antibodies against zinc oxide and gold.
J Biochem. 2018 Jul 1;164(1):21-25. doi: 10.1093/jb/mvy016.
PMID: 29365097 |
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33.
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Formation of the chaperonin complex studied by 2D NMR spectroscopy.
PLoS One. 2017 Oct 23;12(10):e0187022. doi: 10.1371/journal.pone.0187022. eCollection 2017.
PMID: 29059240 Free PMC article. |
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34.
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Role of Cys73 in the thermostability of farnesyl diphosphate synthase from Geobacillus stearothermophilus.
3 Biotech. 2017 Aug;7(4):236. doi: 10.1007/s13205-017-0792-8. Epub 2017 Jul 10.
PMID: 28695490 Free PMC article. |
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Generation of camelid VHH bispecific constructs via in-cell intein-mediated protein trans-splicing.
Protein Eng Des Sel. 2017 Jan;30(1):15-21. doi: 10.1093/protein/gzw057. Epub 2016 Nov 23.
PMID: 27881685 |
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Aromatic cluster mutations produce focal modulations of β-sheet structure.
Protein Sci. 2015 May;24(5):841-9. doi: 10.1002/pro.2657. Epub 2015 Mar 25.
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Dissection of the ATP-dependent conformational change cycle of a group II chaperonin.
J Mol Biol. 2014 Jan 23;426(2):447-59. doi: 10.1016/j.jmb.2013.09.034. Epub 2013 Oct 10.
PMID: 24120682 |
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The catalytic domain of topological knot tRNA methyltransferase (TrmH) discriminates between substrate tRNA and nonsubstrate tRNA via an induced-fit process.
J Biol Chem. 2013 Aug 30;288(35):25562-25574. doi: 10.1074/jbc.M113.485128. Epub 2013 Jul 18.
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ATP dependent rotational motion of group II chaperonin observed by X-ray single molecule tracking.
PLoS One. 2013 May 29;8(5):e64176. doi: 10.1371/journal.pone.0064176. Print 2013.
PMID: 23734192 Free PMC article. |
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NMR characterization of the interaction of GroEL with amyloid β as a model ligand.
FEBS Lett. 2013 Jun 5;587(11):1605-9. doi: 10.1016/j.febslet.2013.04.007. Epub 2013 Apr 18.
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41.
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The H/D-exchange kinetics of the Escherichia coli co-chaperonin GroES studied by 2D NMR and DMSO-quenched exchange methods.
J Mol Biol. 2013 Jul 24;425(14):2541-60. doi: 10.1016/j.jmb.2013.04.008. Epub 2013 Apr 11.
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42.
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Molecular mechanisms of the cytotoxicity of human α-lactalbumin made lethal to tumor cells (HAMLET) and other protein-oleic acid complexes.
J Biol Chem. 2013 May 17;288(20):14408-14416. doi: 10.1074/jbc.M112.437889. Epub 2013 Apr 11.
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Structural insights into the stability perturbations induced by N-terminal variation in human and goat α-lactalbumin.
Protein Eng Des Sel. 2013 Feb;26(2):165-70. doi: 10.1093/protein/gzs093. Epub 2012 Nov 14.
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44.
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The molten globule of β(2)-microglobulin accumulated at pH 4 and its role in protein folding.
J Mol Biol. 2013 Jan 23;425(2):273-91. doi: 10.1016/j.jmb.2012.11.002. Epub 2012 Nov 12.
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Native-state heterogeneity of β(2)-microglobulin as revealed by kinetic folding and real-time NMR experiments.
J Mol Biol. 2013 Jan 23;425(2):257-72. doi: 10.1016/j.jmb.2012.11.004. Epub 2012 Nov 12.
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Sequential four-state folding/unfolding of goat α-lactalbumin and its N-terminal variants.
Proteins. 2012 Aug;80(9):2191-206. doi: 10.1002/prot.24109. Epub 2012 Jun 18.
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Fibrillogenic propensity of the GroEL apical domain: a Janus-faced minichaperone.
FEBS Lett. 2012 Apr 24;586(8):1120-7. doi: 10.1016/j.febslet.2012.03.019. Epub 2012 Mar 23.
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Dissecting a bimolecular process of MgATP²- binding to the chaperonin GroEL.
J Mol Biol. 2011 Jul 8;410(2):343-56. doi: 10.1016/j.jmb.2011.05.018. Epub 2011 May 18.
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Minimalist design of water-soluble cross-beta architecture.
Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3469-74. doi: 10.1073/pnas.0912654107. Epub 2010 Feb 4.
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Different folding pathways taken by highly homologous proteins, goat alpha-lactalbumin and canine milk lysozyme.
J Mol Biol. 2010 Mar 12;396(5):1361-78. doi: 10.1016/j.jmb.2010.01.021. Epub 2010 Jan 18.
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Flexible recognition of the tRNA G18 methylation target site by TrmH methyltransferase through first binding and induced fit processes.
J Biol Chem. 2010 Mar 19;285(12):9018-29. doi: 10.1074/jbc.M109.065698. Epub 2010 Jan 6.
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Structural basis for exquisite specificity of affinity clamps, synthetic binding proteins generated through directed domain-interface evolution.
J Mol Biol. 2009 Oct 9;392(5):1221-31. doi: 10.1016/j.jmb.2009.07.067. Epub 2009 Jul 30.
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Molecular mechanism of thioflavin-T binding to the surface of beta-rich peptide self-assemblies.
J Mol Biol. 2009 Jan 30;385(4):1052-63. doi: 10.1016/j.jmb.2008.11.006. Epub 2008 Nov 14.
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The promiscuity of beta-strand pairing allows for rational design of beta-sheet face inversion.
J Am Chem Soc. 2008 Nov 5;130(44):14370-1. doi: 10.1021/ja805011h. Epub 2008 Oct 9.
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Aromatic cross-strand ladders control the structure and stability of beta-rich peptide self-assembly mimics.
J Mol Biol. 2008 Oct 31;383(1):205-13. doi: 10.1016/j.jmb.2008.08.031. Epub 2008 Aug 22.
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Design of protein function leaps by directed domain interface evolution.
Proc Natl Acad Sci U S A. 2008 May 6;105(18):6578-83. doi: 10.1073/pnas.0801097105. Epub 2008 Apr 29.
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High-resolution structure of a self-assembly-competent form of a hydrophobic peptide captured in a soluble beta-sheet scaffold.
J Mol Biol. 2008 Apr 25;378(2):459-67. doi: 10.1016/j.jmb.2008.02.051. Epub 2008 Mar 4.
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Beta-strand flipping and slipping triggered by turn replacement reveal the opportunistic nature of beta-strand pairing.
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Thermodynamic consequences of mutations in vernier zone residues of a humanized anti-human epidermal growth factor receptor murine antibody, 528.
J Biol Chem. 2008 Jan 11;283(2):1156-66. doi: 10.1074/jbc.M706190200. Epub 2007 Oct 17.
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Human CD4+ central and effector memory T cells produce IL-21: effect on cytokine-driven proliferation of CD4+ T cell subsets.
Int Immunol. 2007 Oct;19(10):1191-9. doi: 10.1093/intimm/dxm090. Epub 2007 Aug 13.
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High IL-21 receptor expression and apoptosis induction by IL-21 in follicular lymphoma.
Cancer Lett. 2007 Oct 28;256(2):196-206. doi: 10.1016/j.canlet.2007.06.001. Epub 2007 Jul 10.
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Hydrophobic surface burial is the major stability determinant of a flat, single-layer beta-sheet.
J Mol Biol. 2007 Apr 20;368(1):230-43. doi: 10.1016/j.jmb.2007.02.003. Epub 2007 Feb 7.
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Atomic structures of peptide self-assembly mimics.
Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):17753-8. doi: 10.1073/pnas.0606690103. Epub 2006 Nov 8.
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Atomic-resolution crystal structure of Borrelia burgdorferi outer surface protein A via surface engineering.
Protein Sci. 2006 Aug;15(8):1907-14. doi: 10.1110/ps.062246706. Epub 2006 Jul 5.
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Humanization of the bispecific epidermal growth factor receptor x CD3 diabody and its efficacy as a potential clinical reagent.
Clin Cancer Res. 2006 Jul 1;12(13):4036-42. doi: 10.1158/1078-0432.CCR-06-0059.
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Tumor-directed lymphocyte-activating cytokines: refolding-based preparation of recombinant human interleukin-12 and an antibody variable domain-fused protein by additive-introduced stepwise dialysis.
Biochem Biophys Res Commun. 2005 Mar 4;328(1):98-105. doi: 10.1016/j.bbrc.2004.12.141.
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A highly effective and stable bispecific diabody for cancer immunotherapy: cure of xenografted tumors by bispecific diabody and T-LAK cells.
Cancer Immunol Immunother. 2004 Jun;53(6):497-509. doi: 10.1007/s00262-003-0465-9. Epub 2003 Nov 25.
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Efficient construction of a diabody using a refolding system: anti-carcinoembryonic antigen recombinant antibody fragment.
J Biochem. 2002 Dec;132(6):903-9. doi: 10.1093/oxfordjournals.jbchem.
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Antitumor activity of interleukin-21 prepared by novel refolding procedure from inclusion bodies expressed in Escherichia coli.
FEBS Lett. 2002 Sep 25;528(1-3):70-6. doi: 10.1016/s0014-5793(02)03254-4.
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